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PROT File - What is a .prot file and how do I open it?
Learn about .PROT files and view a list of programs that open them.
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Genel Bakış
What is a PROT file? A PROT file is an atom list created and used by XEASY, a Nuclear Magnetic Resonance (NMR) spectrum analysis application. It is a plain text file that describes an atom's nuclear magnetic resonance. PROT files are meant to be opened and viewed in XEASY, using the Load atoms option.
More Information Scientists and researchers can use XEASY to perform a 3D spectrum analysis of macromolecules, using NMR. One of the measurements XEASY records is a macromolecule's atom list. The atom list contains the name and frequencies of a macromolecule's resonances, and it is saved as a PROT file. Each PROT file contains several rows of numerical and text values. Each row corresponds to an individual atom, and contains identifying information about that atom. In order, each atom's row includes: The atom's unique ID number The atom's mean chemical shift in part per million The deviation of the atom's assigned peaks from the mean value The atom's name The atom's fragment number The atom's reference lineshapes To create an atom list in XEASY, scientists use the program's Write atoms (chem.shift) [wc] command. This produces a PROT file for the current macromolecule.
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DeveloperGSL Biotech
Popularity2.0 | 1 Vote
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.PROT File Extension
2 file types use the .prot file extension.
XEASY Atom List
| Developer | ETH Zurich |
| Popularity |
2.3 | 3 Votes |
What is a PROT file?
A PROT file is an atom list created and used by XEASY, a Nuclear Magnetic Resonance (NMR) spectrum analysis application. It is a plain text file that describes an atom's nuclear magnetic resonance. PROT files are meant to be opened and viewed in XEASY, using the Load atoms option.
More Information
Scientists and researchers can use XEASY to perform a 3D spectrum analysis of macromolecules, using NMR. One of the measurements XEASY records is a macromolecule's atom list. The atom list contains the name and frequencies of a macromolecule's resonances, and it is saved as a PROT file.
Each PROT file contains several rows of numerical and text values. Each row corresponds to an individual atom, and contains identifying information about that atom. In order, each atom's row includes:
To create an atom list in XEASY, scientists use the program's Write atoms (chem.shift) [wc] command. This produces a PROT file for the current macromolecule.
How to open a PROT file
You can open a PROT file in XEASY (Linux), using the program's Load atoms (chem.shift) [lc] command.
If you do not have access to XEASY, you can also open a PROT file in any text editor, to view the atom list it contains.
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Programs that open PROT files
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Microsoft Notepad
Included with OS
Any text editor
Mac
Apple TextEdit
Included with OS
Any text editor
Linux
ETH Zurich XEASY
Vim
Free
Any text editor
Category: Data Files
Updated: August 27, 2021
SnapGene Protein File
| Developer | GSL Biotech |
| Popularity |
2.0 | 1 Vote |
A PROT file may also be a data file created by GSL Biotech SnapGene, a molecular biology analysis application. It contains a protein sequence and its properties, such as molecular weight and absorbance. PROT files include metadata , such as the creator, a description of the sequence, a history of changes, and comments.
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PROT file open in GSL Biotech SnapGene 6
SnapGene is a molecular biology application that documents, designs, and simulates various types of sequences, including DNA, RNA, and protein. When you save a sequence with SnapGene, the software creates a file to store the contents. Snap Gene saves each type of sequence in a different file format:
To create a PROT file with SnapGene, follow these steps:
After creating the PROT file, you can save it by selecting File → Save or Save As... . Then, after saving the file, you can close it and re-open it to modify the sequence further.
How to open a PROT file
You can open a PROT file with GSL Biotech SnapGene (multiplatform). To open a PROT file with SnapGene, select File → Open Files... .
You can also open a PROT file with SnapGene Viewer (multiplatform). However, it does not provide the same advanced capabilities that SnapGene offers.
How to convert a PROT file
GSL Biotech SnapGene can convert PROT files to various file types, including the following formats:
Programs that open PROT files
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GSL Biotech SnapGene
Free Trial
GSL Biotech SnapGene Viewer
Free
Mac
GSL Biotech SnapGene
Free Trial
GSL Biotech SnapGene Viewer
Free
Linux
GSL Biotech SnapGene
Free Trial
GSL Biotech SnapGene Viewer
Free
Category: Data Files
Updated: November 11, 2022